publications

2022

1. 

   Compounds, compositions and methods of treating disorders

   Mark Rex Spyvee, Jonah Milton Kallenbach, Ankit Gupta, and 2 more authors

   Sep 2022

   US Patent App. 17/744,228

2021

1. 

   Protein design and variant prediction using autoregressive generative models

   Jung-Eun Shin, Adam J Riesselman, Aaron W Kollasch, and 6 more authors

   Nature communications, Apr 2021

2. 

   Chemberta-2: Towards chemical foundation models

   *Walid Ahmad, *Elana Simon, Seyone Chithrananda, and 2 more authors

   ELLIS Machine Learning for Molecule Discovery Workshop, Dec 2021

2020

1. 

   The Fibrolamellar Registry: A patient-based medical registry can address medical care

   Julie Latone Newcomb, Siobhan Lett, Rachael D Migler, and 2 more authors

   Cancer Research, Dec 2020

2019

1. 

   Accelerating protein design using autoregressive generative models

   Adam Riesselman, Jung-Eun Shin, Aaron Kollasch, and 6 more authors

   BioRxiv, Sep 2019

2. 

   The fibrolamellar registry: A model for the study of rare diseases

   Michelle Desmond, Julie Latone, Siobhan Lett, and 3 more authors

   Cancer Research, Sep 2019

2018

1. 

   Non coding RNA analysis in fibrolamellar hepatocellular carcinoma

   Benjamin A Farber, Gadi Lalazar, Elana P Simon, and 5 more authors

   Oncotarget, Feb 2018

2015

1. Molecular analysis of the pediatric cancer fibrolamellar hepatocellular carcinoma

   Elana P Simon, Joshua N Honeyman, David G Darcy, and 8 more authors

   Cancer Research, Apr 2015

2. 

   Transcriptomic characterization of fibrolamellar hepatocellular carcinoma

   Elana P Simon, Catherine A Freije, Benjamin A Farber, and 8 more authors

   Proceedings of the National Academy of Sciences, Apr 2015

2014

1. 

   Detection of a recurrent DNAJB1-PRKACA chimeric transcript in fibrolamellar hepatocellular carcinoma

   *Joshua N Honeyman, *Elana P Simon, Nicolas Robine, and 8 more authors

   Science, Apr 2014